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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
60
ChIP-seq
21
ATAC-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
123
Transcription
60
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
15
control
14
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
127
May, 2021
26
February, 2021
17
August, 2021
14
August, 2017
14
February, 2023
8
March, 2020
6
October, 2019
2
December, 2019
Available data
291
bam
259
bigWig
fastq
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
214
Homo sapiens
Biosample type
1585
tissue
473
primary cell
214
in vitro differentiated cells
178
cell line
6
stem cell
Organ
40
connective tissue
3
epithelium
2
embryo
1
heart
1
pancreas
Project
214
AMP
Genome assembly (visualization)
141
hg19
112
GRCh38
Lab
164
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
100
inconsistent ontology term
2
audit script error
files.file_type!
bed narrowPeak
fastq
BIOSAMPLE
ASSAY
214 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
5
37
5
1
adipocyte
5
14
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
8
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