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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
108
single cell RNA-seq
55
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
309
Transcription
76
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Date released
May, 2022
99
February, 2023
68
May, 2021
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
5
March, 2023
4
March, 2020
3
October, 2022
Available data
196
bigWig
186
bam
169
fastq
104
tsv
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
4
hic
3
bedpe bed3+
3
cool
Organism
412
Homo sapiens
Biosample type
311
primary cell
95
tissue
9
cell line
2
stem cell
Organ
102
pancreas
74
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
190
HPAP
156
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
109
GRCh38
101
hg19
Lab
190
Klaus Kaestner, Upenn
152
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
7
inconsistent ontology term
files.file_type!
bed narrowPeak
ibed
month_released!
May, 2022
award.project!
AMP
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
52
27
pancreatic alpha cell
42
7
6
1
monocyte
53
1
exocrine cell
39
pancreatic beta cell
11
3
1
+ See 37 more…
tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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