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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
116
DNA binding
89
Transcription
15
DNA methylation
1
DNA accessibility
Target of assay
54
histone
54
histone modification
39
control
30
broad histone mark
24
narrow histone mark
23
transcription factor
1
RNA binding protein
Date released
689
February, 2021
291
May, 2020
265
May, 2021
221
August, 2017
205
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
116
October, 2019
101
July, 2019
70
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
3
October, 2017
1
August, 2022
Available data
287
fastq
282
bam
272
bigWig
bed narrowPeak
89
tsv
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
221
Homo sapiens
Biosample type
185
tissue
25
primary cell
11
in vitro differentiated cells
Organ
135
pancreas
58
connective tissue
47
adipose tissue
16
liver
12
epithelium
11
musculature of body
Project
221
AMP
Genome assembly (visualization)
133
hg19
131
GRCh38
Lab
221
AMP-T2D consortium
Audit category:
38
missing controlled_by
files.file_type!
bed narrowPeak
tagAlign
assay_title!
shRNA RNA-seq
BIOSAMPLE
ASSAY
221 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
21
89
subcutaneous abdominal adipose tissue
28
3
liver
11
3
1
white adipose tissue
12
skeletal muscle tissue
7
4
+ See 3 more…
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
in vitro differentiated cells
adipocyte
11
See all biosamples
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