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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
18
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
21
October, 2019
5
July, 2019
3
February, 2020
1
May, 2019
Available data
114
bam
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
30
Homo sapiens
Biosample type
30
tissue
Organ
653
pancreas
584
connective tissue
471
adipose tissue
302
liver
301
epithelium
151
bone element
107
heart
107
kidney
95
vasculature
93
blood vessel
63
artery
45
brain
33
musculature of body
30
limb
28
eye
23
embryo
16
nerve
15
blood
15
bodily fluid
11
lung
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
5
GRCh38
4
hg19
Lab
30
AMP-T2D consortium
files.file_type!
bed narrowPeak
tagAlign
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
muscle of leg
1
1
islet of Langerhans
1
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