Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
219
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1227
Transcription
219
DNA binding
81
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
135
control
67
histone
67
histone modification
41
narrow histone mark
26
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
185
August, 2017
165
August, 2021
143
May, 2020
120
July, 2018
82
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
25
February, 2020
22
May, 2019
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
12
December, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2017
4
November, 2020
3
December, 2019
3
October, 2017
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1907
bam
1732
bigWig
1076
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1698
Homo sapiens
Biosample type
1700
tissue
791
primary cell
252
cell line
240
in vitro differentiated cells
8
stem cell
Organ
527
connective tissue
468
adipose tissue
378
pancreas
205
liver
150
bone element
146
kidney
140
heart
38
brain
33
blood vessel
33
vasculature
30
limb
29
musculature of body
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1605
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
978
hg19
976
GRCh38
Lab
1490
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
21
missing controlled_by
files.file_type!
bed narrowPeak
tagAlign
BIOSAMPLE
ASSAY
1700 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
48
31
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
20
1
3
1
1
1
1
kidney
49
7
64
11
6
1
1
bone element
84
+ See 84 more…
See all biosamples
Download