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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
174
single cell RNA-seq
133
ChIP-seq
87
RNA microarray
49
ATAC-seq
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1124
Transcription
133
DNA binding
78
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
70
control
64
histone
64
histone modification
39
narrow histone mark
25
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
537
February, 2021
165
August, 2021
143
May, 2020
118
July, 2018
82
October, 2019
70
July, 2019
57
August, 2017
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
25
February, 2020
22
May, 2019
22
May, 2022
20
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
8
January, 2021
4
March, 2019
4
November, 2017
4
November, 2020
3
December, 2019
2
January, 2018
2
October, 2018
1
August, 2022
Available data
1907
bam
1772
bigWig
1076
tsv
bed narrowPeak
561
bigBed narrowPeak
fastq
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1493
Homo sapiens
Biosample type
1495
tissue
472
primary cell
192
in vitro differentiated cells
175
cell line
6
stem cell
Organ
493
connective tissue
434
adipose tissue
243
pancreas
183
liver
150
bone element
146
kidney
140
heart
36
brain
33
blood vessel
33
vasculature
30
limb
27
musculature of body
26
eye
20
lung
16
nerve
11
artery
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
1400
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
853
hg19
845
GRCh38
Lab
1293
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
9
audit script error
files.file_type!
bed narrowPeak
tagAlign
fastq
BIOSAMPLE
ASSAY
1495 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
2
1
islet of Langerhans
195
32
29
7
4
3
1
4
liver
167
1
3
1
2
1
1
kidney
49
64
7
11
6
1
1
bone element
84
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