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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
18
DNA binding
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
18
control
Date released
10
April, 2019
10
July, 2019
6
May, 2019
2
June, 2019
2
March, 2020
1
February, 2023
1
October, 2019
Available data
224
bigWig
211
bam
bed narrowPeak
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
tagAlign
3
bedpe bed3+
3
hic
Organism
32
Homo sapiens
Biosample type
29
tissue
3
primary cell
Organ
310
pancreas
215
epithelium
147
kidney
129
liver
110
connective tissue
93
bone element
70
adipose tissue
33
vasculature
32
heart
31
blood vessel
25
musculature of body
23
eye
23
limb
22
brain
19
lung
15
blood
15
bodily fluid
11
nerve
10
spleen
9
embryo
9
vein
8
skeleton
7
artery
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
32
AMP
Genome assembly (visualization)
6
GRCh38
5
hg19
Lab
32
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bed narrowPeak
tagAlign
tsv
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
6
4
1
1
heart
2
1
1
1
heart right ventricle
2
2
1
right atrium auricular region
3
coronary artery
2
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primary cell
cardiac fibroblast
2
1
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