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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
8
single cell RNA-seq
7
ATAC-seq
Assay category
8
DNA binding
8
Transcription
7
DNA accessibility
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
10
February, 2021
6
November, 2017
2
October, 2019
1
February, 2023
1
March, 2019
1
November, 2018
1
October, 2017
1
September, 2018
Available data
3392
bam
3169
bigWig
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
23
Homo sapiens
Biosample type
8
tissue
6
cell line
5
in vitro differentiated cells
4
primary cell
Organ
7
liver
5
kidney
4
connective tissue
2
blood vessel
2
epithelium
2
pancreas
2
vasculature
2
vein
Project
23
AMP
Genome assembly (visualization)
14
hg19
1
GRCh38
Lab
20
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
1
Struan F.A. Grant, CHOP
Audit category:
5
audit script error
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
23 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
kidney
5
islet of Langerhans
2
liver
1
cell line
HepG2
6
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
primary cell
endothelial cell of umbilical vein
2
pancreatic cell
2
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