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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
4
ATAC-seq
Assay category
8
DNA binding
4
DNA accessibility
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
4
February, 2021
2
October, 2019
Available data
3187
bam
2859
bigWig
bed narrowPeak
1488
tsv
1163
fastq
1042
bigBed narrowPeak
320
bed broadPeak
314
tagAlign
285
bigBed broadPeak
269
bed bed3+
95
txt
36
bed bedMethyl
36
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
4
tar
2
ibed
1
tagAlign bed3+
Organism
12
Homo sapiens
Biosample type
6
cell line
4
in vitro differentiated cells
2
primary cell
Organ
6
liver
4
connective tissue
2
blood vessel
2
epithelium
2
vasculature
2
vein
Project
12
AMP
Genome assembly (visualization)
12
hg19
Lab
12
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
1
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
12 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
6
in vitro differentiated cells
adipocyte
4
primary cell
endothelial cell of umbilical vein
2
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