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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
WGBS
8
ChIP-seq
Assay category
36
DNA methylation
8
DNA binding
Target of assay
4
histone
4
histone modification
4
transcription factor
3
broad histone mark
1
narrow histone mark
Date released
23
July, 2019
7
November, 2018
6
August, 2017
6
November, 2017
2
October, 2019
Available data
3392
bam
3169
bigWig
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
44
Homo sapiens
Biosample type
25
tissue
12
primary cell
7
cell line
Organ
9
liver
8
epithelium
8
heart
6
pancreas
4
kidney
4
musculature of body
4
vasculature
3
blood vessel
3
connective tissue
2
adipose tissue
2
brain
2
spleen
2
vein
1
eye
1
limb
1
pericardium
Project
44
AMP
Genome assembly (visualization)
27
hg19
17
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
44 results
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Clear Filters
RRBS
WGBS
ChIP-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 11 more…
primary cell
endothelial cell of umbilical vein
2
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 6 more…
cell line
HepG2
1
6
See all biosamples
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