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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ATAC-seq
3
Hi-C
Assay category
3
3D chromatin structure
3
DNA accessibility
Date released
3
October, 2019
3
October, 2022
Available data
3392
bam
3129
bigWig
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
1
tissue
Organ
3
connective tissue
3
epithelium
3
pancreas
1
adipose tissue
Project
3
AMP
3
HPAP
Genome assembly (visualization)
6
hg19
Lab
3
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
6 results
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ATAC-seq
Hi-C
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
2
tissue
adipose tissue
1
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