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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
38
ChIP-seq
10
RRBS
6
Hi-C
3
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
1
DNAme array
1
pCHi-C
Assay category
114
DNA accessibility
38
DNA binding
11
DNA methylation
6
3D chromatin structure
5
Transcription
Target of assay
29
control
9
histone
9
histone modification
6
broad histone mark
3
narrow histone mark
Date released
102
May, 2020
14
August, 2017
13
July, 2019
12
February, 2023
11
October, 2019
8
June, 2019
6
May, 2021
3
November, 2017
1
August, 2021
1
February, 2021
1
March, 2020
1
May, 2019
1
November, 2018
1
September, 2018
Available data
84
bam
59
bigWig
21
fastq
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
5
bed bed3+
4
bed broadPeak
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
2
csv
2
hic
2
tagAlign
1
bedpe bed3+
1
tar
Organism
175
Homo sapiens
Biosample type
621
tissue
175
primary cell
119
cell line
75
in vitro differentiated cells
5
stem cell
Organ
38
epithelium
14
vasculature
12
blood vessel
12
pancreas
9
vein
8
kidney
7
brain
6
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
Project
175
AMP
Genome assembly (visualization)
236
hg19
GRCh38
Lab
314
Klaus Kaestner, Upenn
175
AMP-T2D consortium
29
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
1
audit script error
files.file_type!
bed narrowPeak
assembly!
GRCh38
BIOSAMPLE
ASSAY
175 results
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ATAC-seq
ChIP-seq
RRBS
Hi-C
total RNA-seq
DNase-seq
single cell RNA-seq
DNAme array
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
endothelial cell of umbilical vein
7
2
pancreatic alpha cell
6
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