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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
WGBS
1
whole genome sequencing assay
Assay category
71
DNA binding
14
Transcription
2
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
60
control
9
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
66
November, 2017
17
August, 2021
5
January, 2019
2
November, 2018
1
December, 2018
1
February, 2021
1
May, 2020
Available data
367
fastq
366
bam
332
bigWig
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
93
Homo sapiens
Biosample type
248
tissue
93
cell line
8
primary cell
1
in vitro differentiated cells
Organ
93
liver
71
pancreas
64
epithelium
54
artery
54
blood vessel
54
heart
54
vasculature
11
kidney
8
embryo
7
blood
7
bodily fluid
1
mammary gland
Project
93
AMP
Genome assembly (visualization)
26
hg19
6
GRCh38
Lab
76
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
month_released!
August, 2018
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
WGBS
whole genome sequencing assay
cell line
HepG2
71
14
2
2
2
1
1
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