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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
48
DNA binding
13
Transcription
3
DNA accessibility
Target of assay
28
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
July, 2019
12
February, 2020
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
230
bam
206
bigWig
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
21
fastq
15
tsv
1
bed bed3
1
tagAlign bed3+
Organism
66
Homo sapiens
Biosample type
63
tissue
3
primary cell
Organ
726
pancreas
591
connective tissue
466
adipose tissue
360
epithelium
340
liver
181
heart
161
kidney
151
bone element
93
vasculature
92
blood vessel
66
brain
65
artery
27
eye
26
musculature of body
25
limb
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
7
hg19
4
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
month_released!
July, 2019
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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