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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
total RNA-seq
139
ChIP-seq
5
WGBS
3
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
Transcription
139
DNA binding
7
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
1
October, 2019
Available data
680
bam
621
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
172
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
1
vcf
Organism
347
Homo sapiens
Biosample type
245
tissue
93
cell line
8
primary cell
1
in vitro differentiated cells
Organ
721
pancreas
607
connective tissue
477
adipose tissue
368
epithelium
347
liver
195
heart
169
kidney
151
bone element
99
vasculature
97
blood vessel
81
brain
67
artery
31
musculature of body
30
limb
28
eye
23
embryo
19
lung
16
nerve
15
blood
15
bodily fluid
10
spleen
8
skeleton
8
vein
4
gonad
4
ovary
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
347
AMP
Genome assembly (visualization)
186
hg19
163
GRCh38
Lab
310
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
347 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
166
63
3
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
71
1
2
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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