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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
pCHi-C
15
total RNA-seq
10
Hi-C
7
ATAC-seq
5
GRO-seq
Assay category
15
Transcription
10
3D chromatin structure
7
DNA accessibility
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
45
tsv
28
bigWig
16
bam
12
bedpe bed3+
10
hic
5
fastq
bed narrowPeak
2
ibed
Organism
69
Homo sapiens
Biosample type
40
tissue
12
in vitro differentiated cells
11
cell line
5
stem cell
1
primary cell
Organ
11
pancreas
7
heart
6
musculature of body
5
epithelium
4
blood vessel
4
vasculature
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
blood
1
bodily fluid
1
embryo
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
65
AMP
4
T1D
Genome assembly (visualization)
32
hg19
13
GRCh38
5
hg18
Lab
69
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
69 results
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Clear Filters
pCHi-C
total RNA-seq
Hi-C
ATAC-seq
GRO-seq
tissue
psoas muscle
1
2
2
islet of Langerhans
2
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 17 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
Posterior foregut
1
definitive endodermal cell
1
embryonic stem cell
1
+ See 2 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
GM12878
1
MCF-7
1
RCC 7860 VHL
1
+ See 2 more…
stem cell
hESC
1
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
primary cell
endothelial cell of umbilical vein
1
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