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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
Assay category
58
DNA binding
Target of assay
154
control
58
histone
58
histone modification
31
broad histone mark
27
narrow histone mark
26
transcription factor
7
RNA binding protein
3
nucleotide modification
1
recombinant protein
Date released
24
August, 2017
24
May, 2021
6
October, 2019
2
November, 2017
1
August, 2021
1
December, 2017
Available data
347
bigWig
bed narrowPeak
319
bam
156
fastq
135
tagAlign
79
bigBed narrowPeak
30
bed broadPeak
30
bigBed broadPeak
13
bed bed3+
Organism
58
Homo sapiens
Biosample type
tissue
34
in vitro differentiated cells
21
primary cell
3
cell line
Organ
13
pancreas
12
connective tissue
5
blood vessel
5
epithelium
5
vasculature
5
vein
2
liver
1
embryo
Project
58
AMP
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
38
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
13
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
organ_slims!
artery
biosample_type!
tissue
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
20
adipocyte
12
neural progenitor cell
1
pancreatic endoderm
1
primary cell
pancreatic endocrine cell
12
endothelial cell of umbilical vein
5
naive thymus-derived CD4-positive, alpha-beta T cell
2
monocyte
1
neutrophil
1
cell line
HepG2
2
Panc1
1
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