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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
17
total RNA-seq
16
ChIP-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
16
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
16
control
Date released
92
August, 2021
19
July, 2019
10
April, 2019
7
March, 2020
4
May, 2019
3
May, 2021
3
October, 2019
2
February, 2020
2
June, 2019
1
February, 2023
Available data
135
bam
120
bigWig
113
tsv
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
143
Homo sapiens
Biosample type
137
tissue
5
primary cell
1
in vitro differentiated cells
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
143
AMP
Genome assembly (visualization)
22
GRCh38
21
hg19
Lab
143
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
143 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
6
4
1
1
1
heart right ventricle
17
1
2
2
1
1
right cardiac atrium
18
1
1
1
left cardiac atrium
18
heart
1
4
2
1
1
1
+ See 9 more…
primary cell
cardiac fibroblast
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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