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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1396
total RNA-seq
514
ChIP-seq
299
single cell RNA-seq
186
ATAC-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
18
Transcription
Date released
18
July, 2019
3
February, 2023
Available data
18
bam
18
bigWig
18
tsv
Organism
21
Homo sapiens
Biosample type
16
tissue
3
cell line
2
primary cell
Organ
4
brain
3
adipose tissue
3
connective tissue
3
liver
2
musculature of body
2
pancreas
1
heart
1
kidney
Project
18
AMP
3
T1D
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
18
AMP-T2D consortium
3
Kyle Gaulton, UCSD
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
21 results
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small RNA-seq
CRISPR genome editing followed by DNA sequencing
tissue
body of pancreas
2
right lobe of liver
2
cerebellum (Hemisphere)
1
diencephalon
1
frontal cortex
1
+ See 9 more…
cell line
EndoC_BH1
3
primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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