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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
total RNA-seq
3
ATAC-seq
1
Hi-C
Assay category
13
Transcription
3
DNA accessibility
1
3D chromatin structure
Date released
519
February, 2021
233
May, 2020
177
May, 2021
131
July, 2018
130
August, 2017
71
July, 2019
20
November, 2017
19
November, 2019
17
October, 2019
16
April, 2018
15
August, 2021
15
February, 2018
13
March, 2020
8
January, 2018
7
November, 2018
5
January, 2019
4
November, 2020
2
June, 2018
2
October, 2017
1
February, 2023
Available data
218
bam
182
bigWig
bed narrowPeak
56
bigBed narrowPeak
49
tagAlign
13
tsv
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bedpe bed3+
3
hic
1
hdf5
1
tagAlign bed3+
Organism
17
Homo sapiens
Biosample type
9
tissue
4
cell line
4
in vitro differentiated cells
Organ
6
kidney
epithelium
4
limb
4
nerve
3
connective tissue
2
blood vessel
2
heart
2
vasculature
2
vein
1
adipose tissue
1
brain
1
liver
1
pancreas
Project
17
AMP
Genome assembly (visualization)
17
hg19
14
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bed narrowPeak
organ_slims!
epithelium
BIOSAMPLE
ASSAY
17 results
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Clear Filters
total RNA-seq
ATAC-seq
Hi-C
tissue
tibial nerve
4
heart
2
adipose tissue
1
brain
1
liver
1
cell line
Panc1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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