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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1259
total RNA-seq
347
ChIP-seq
274
single cell RNA-seq
213
ATAC-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
39
pCHi-C
23
Hi-C
19
RRBS
17
small RNA-seq
4
MeRIP-seq
3
DNase-seq
3
snDrop-seq
1
DNAme array
Assay category
1550
Transcription
347
DNA binding
300
DNA accessibility
86
DNA methylation
23
3D chromatin structure
Target of assay
204
control
129
histone
129
histone modification
69
narrow histone mark
60
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
584
February, 2021
313
May, 2020
244
August, 2017
168
July, 2018
162
May, 2022
119
February, 2023
117
May, 2021
101
October, 2019
80
July, 2019
74
August, 2021
59
September, 2020
49
April, 2018
47
September, 2023
32
March, 2020
31
October, 2018
27
November, 2017
27
September, 2018
22
February, 2020
20
November, 2019
19
April, 2020
17
May, 2019
16
January, 2021
15
May, 2023
12
December, 2017
11
October, 2017
10
November, 2018
8
December, 2019
8
November, 2020
7
August, 2020
6
June, 2019
6
September, 2017
5
April, 2019
5
March, 2019
4
December, 2018
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
January, 2019
1
March, 2023
Available data
2372
bam
2218
bigWig
1231
tsv
bed narrowPeak
786
fastq
576
bigBed narrowPeak
338
tagAlign
232
bed broadPeak
212
bed bed3+
195
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
14
hic
11
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
2436
Homo sapiens
Biosample type
1653
tissue
786
primary cell
261
in vitro differentiated cells
204
cell line
8
stem cell
Organ
660
pancreas
556
connective tissue
477
adipose tissue
303
epithelium
256
liver
160
kidney
151
bone element
heart
83
brain
49
vasculature
47
blood vessel
36
musculature of body
30
limb
28
eye
20
lung
16
nerve
13
artery
11
spleen
9
vein
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1899
AMP
324
HPAP
149
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1296
hg19
1228
GRCh38
Lab
1779
AMP-T2D consortium
324
Klaus Kaestner, Upenn
159
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
114
inconsistent ontology term
40
audit script error
Audit category:
34
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
2439 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
MeRIP-seq
DNase-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans
292
51
6
31
7
4
3
1
4
adipose tissue
382
1
2
3
1
liver
167
63
1
3
1
1
1
1
kidney
49
7
64
11
6
1
1
bone element
84
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primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
6
12
29
31
1
pancreatic beta cell
21
6
12
16
16
1
monocyte
54
1
2
1
1
exocrine cell
39
+ See 82 more…
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