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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
979
total RNA-seq
296
ChIP-seq
87
RNA microarray
87
single cell RNA-seq
52
ATAC-seq
28
snATAC-seq
21
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1081
Transcription
296
DNA binding
81
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
171
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
120
July, 2018
88
October, 2019
73
August, 2021
54
July, 2019
47
September, 2023
May, 2021
31
February, 2023
31
March, 2020
29
October, 2018
28
May, 2022
24
November, 2017
22
February, 2020
20
November, 2019
19
April, 2020
16
May, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
April, 2019
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1739
bam
1579
bigWig
929
tsv
bed narrowPeak
473
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1612
Homo sapiens
Biosample type
1615
tissue
707
primary cell
184
cell line
135
in vitro differentiated cells
8
stem cell
Organ
534
connective tissue
475
adipose tissue
345
pancreas
248
liver
150
bone element
146
kidney
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
20
lung
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1521
AMP
47
KPMP
28
T1D
19
LungMap
Genome assembly (visualization)
925
hg19
921
GRCh38
Lab
1407
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
32
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
heart
month_released!
May, 2021
BIOSAMPLE
ASSAY
1615 results
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total RNA-seq
ChIP-seq
RNA microarray
single cell RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
adipose tissue
382
1
2
1
3
islet of Langerhans
256
51
6
31
7
4
3
1
4
liver
167
63
1
1
3
1
1
1
kidney
49
7
64
11
6
1
1
bone element
84
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