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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
8
snATAC-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
28
DNA binding
12
Transcription
9
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
23
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
13
October, 2019
9
May, 2019
8
January, 2021
7
July, 2019
6
August, 2021
4
March, 2020
3
January, 2019
3
November, 2018
2
February, 2020
1
January, 2018
1
November, 2017
Available data
164
bam
141
bigWig
bed narrowPeak
128
bigBed narrowPeak
63
fastq
13
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
57
Homo sapiens
Biosample type
30
tissue
20
primary cell
7
cell line
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
49
AMP
8
T1D
Genome assembly (visualization)
13
hg19
5
GRCh38
Lab
49
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
organ_slims!
heart
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
ATAC-seq
pCHi-C
tissue
aorta
2
4
1
1
2
1
thoracic aorta
4
2
tibial artery
5
1
ascending aorta
3
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
7
2
peripheral blood mononuclear cell
8
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
GM12878
6
1
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