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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ChIP-seq
5
RRBS
5
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
11
DNA binding
8
Transcription
5
DNA methylation
2
DNA accessibility
Target of assay
6
histone
6
histone modification
5
control
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
3
March, 2020
2
June, 2019
2
May, 2022
1
February, 2020
1
January, 2018
Available data
29
bigWig
bed narrowPeak
17
bam
15
tagAlign
14
bed broadPeak
9
bigBed narrowPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
bedpe bed3+
2
fastq
2
hic
1
bigBed broadPeak
1
txt
Organism
27
Homo sapiens
Biosample type
22
tissue
5
primary cell
Organ
725
pancreas
608
connective tissue
477
adipose tissue
368
epithelium
348
liver
199
heart
171
kidney
151
bone element
101
vasculature
99
blood vessel
83
brain
67
artery
34
musculature of body
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
11
hg19
6
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
bedpe bed3+
organ_slims!
limb
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
RRBS
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
1
1
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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