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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
Hi-C
3
pCHi-C
Assay category
14
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
2739
bam
2499
bigWig
bed narrowPeak
1323
tsv
947
fastq
895
bigBed narrowPeak
283
tagAlign
228
bed broadPeak
204
bigBed broadPeak
203
bed bed3+
160
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
17
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
17
Homo sapiens
Biosample type
8
tissue
7
in vitro differentiated cells
primary cell
2
cell line
Organ
4
pancreas
3
heart
2
liver
musculature of body
1
adipose tissue
1
blood vessel
1
connective tissue
1
epithelium
1
vasculature
Project
17
AMP
Genome assembly (visualization)
15
hg19
Lab
15
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
biosample_type!
primary cell
BIOSAMPLE
ASSAY
17 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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