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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
28
DNA accessibility
18
Transcription
Date released
645
February, 2021
230
August, 2017
212
August, 2021
187
May, 2021
167
May, 2020
120
July, 2018
112
October, 2019
90
November, 2017
63
July, 2019
55
March, 2020
52
February, 2023
47
September, 2023
29
October, 2018
26
May, 2022
24
November, 2019
23
February, 2018
23
February, 2020
22
December, 2017
21
May, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
November, 2018
11
October, 2017
10
November, 2020
9
January, 2019
8
January, 2021
7
January, 2018
6
April, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
bed narrowPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
3
bigWig
Organism
51
Homo sapiens
Biosample type
primary cell
32
tissue
14
in vitro differentiated cells
6
cell line
Organ
19
pancreas
13
connective tissue
8
bone element
8
skeleton
4
eye
3
epithelium
1
brain
1
heart
Project
29
AMP
23
T1D
Genome assembly (visualization)
15
hg19
Lab
28
AMP-T2D consortium
23
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
biosample_type!
primary cell
BIOSAMPLE
ASSAY
52 results
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Clear Filters
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
islet of Langerhans
11
5
2
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pigmented layer of retina
2
+ See 4 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
cell line
EndoC_BH1
3
2
1
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