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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
92
ChIP-seq
17
ATAC-seq
6
WGBS
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
92
DNA binding
17
DNA accessibility
6
DNA methylation
Target of assay
43
histone
43
histone modification
32
control
28
broad histone mark
17
transcription factor
15
narrow histone mark
Date released
452
February, 2021
79
August, 2017
18
October, 2018
13
February, 2023
10
July, 2019
4
October, 2019
3
August, 2021
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
May, 2021
1
May, 2023
Available data
557
bam
538
bigWig
463
tsv
98
fastq
bed narrowPeak
22
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
586
Homo sapiens
Biosample type
534
tissue
52
in vitro differentiated cells
primary cell
1
stem cell
Organ
587
connective tissue
476
adipose tissue
454
pancreas
342
liver
195
heart
157
kidney
150
bone element
87
blood vessel
87
vasculature
73
brain
73
epithelium
65
artery
musculature of body
30
limb
26
eye
23
embryo
20
lung
16
nerve
11
spleen
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
587
AMP
Genome assembly (visualization)
497
hg19
480
GRCh38
Lab
585
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
17
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
biosample_type!
primary cell
BIOSAMPLE
ASSAY
587 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
1
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
+ See 3 more…
in vitro differentiated cells
adipocyte
5
25
7
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
cardiac fibroblast
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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