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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
51
ChIP-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
51
DNA binding
4
DNA methylation
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
31
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
Date released
167
May, 2020
26
August, 2017
20
May, 2022
18
August, 2021
10
July, 2019
5
December, 2019
3
March, 2020
2
February, 2021
1
February, 2020
1
October, 2019
Available data
681
bam
622
bigWig
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
253
Homo sapiens
Biosample type
226
tissue
19
cell line
8
primary cell
Organ
560
connective tissue
443
adipose tissue
406
pancreas
253
liver
202
heart
193
epithelium
171
kidney
151
bone element
101
vasculature
100
blood vessel
76
brain
67
artery
musculature of body
30
limb
28
eye
20
lung
16
nerve
10
embryo
9
blood
9
bodily fluid
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
253
AMP
Genome assembly (visualization)
162
hg19
157
GRCh38
Lab
216
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
files.file_type!
bed narrowPeak
fastq
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
253 results
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total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
46
1
2
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
9
4
1
2
2
1
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
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