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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
total RNA-seq
135
ChIP-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
DNase-seq
1
single cell RNA-seq
Assay category
164
Transcription
135
DNA binding
7
DNA methylation
3
3D chromatin structure
1
DNA accessibility
Target of assay
104
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
36
August, 2017
13
December, 2017
10
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
August, 2021
1
December, 2018
1
February, 2020
1
October, 2019
Available data
681
bam
588
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
165
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
313
Homo sapiens
Biosample type
228
tissue
76
cell line
8
primary cell
1
in vitro differentiated cells
Organ
606
connective tissue
529
pancreas
478
adipose tissue
313
liver
215
epithelium
202
heart
150
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
44
kidney
musculature of body
30
limb
28
eye
23
embryo
16
nerve
11
spleen
9
vein
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
313
AMP
Genome assembly (visualization)
187
hg19
164
GRCh38
Lab
313
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
313 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
DNase-seq
single cell RNA-seq
tissue
liver
147
63
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
5
67
1
1
2
primary cell
hepatocyte
5
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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