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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
10
total RNA-seq
5
single cell RNA-seq
1
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
15
Transcription
2
DNA accessibility
Date released
89
February, 2021
August, 2021
7
May, 2022
5
February, 2023
1
October, 2022
Available data
3319
bam
3106
bigWig
bed narrowPeak
1476
tsv
1334
fastq
1029
bigBed narrowPeak
374
tagAlign
321
bed broadPeak
284
bigBed broadPeak
267
bed bed3+
153
zippedFastqFolder
104
txt
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
101
Homo sapiens
Biosample type
100
tissue
1
cell line
1
in vitro differentiated cells
Organ
88
bone element
6
pancreas
5
kidney
4
skeleton
1
musculature of body
Project
102
AMP
Genome assembly (visualization)
2
hg19
Lab
95
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
files.file_type!
bed narrowPeak
organ_slims!
spleen
month_released!
August, 2021
BIOSAMPLE
ASSAY
102 results
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RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
islet of Langerhans
6
kidney
5
acetabular part of hip bone
1
ilium
1
+ See 3 more…
cell line
MIN6
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
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