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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
1
snATAC-seq
Assay category
16
DNA binding
1
DNA accessibility
Target of assay
10
transcription factor
3
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
14
August, 2017
2
September, 2017
1
May, 2022
Available data
1907
bam
1772
bigWig
1076
tsv
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
17
Homo sapiens
Biosample type
17
tissue
11
in vitro differentiated cells
7
primary cell
2
cell line
1
stem cell
Organ
11
pancreas
4
adipose tissue
4
connective tissue
1
liver
1
musculature of body
Project
17
AMP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
13
missing controlled_by
files.file_type!
bed narrowPeak
organ_slims!
vein
BIOSAMPLE
ASSAY
17 results
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Clear Filters
ChIP-seq
snATAC-seq
tissue
islet of Langerhans
11
white adipose tissue
4
liver
1
skeletal muscle tissue
1
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