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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
5
Hi-C
2
WGBS
1
pCHi-C
Assay category
Transcription
26
DNA binding
5
3D chromatin structure
2
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
13
October, 2019
11
May, 2019
4
July, 2019
3
March, 2020
2
February, 2021
1
November, 2017
Available data
bed narrowPeak
122
bam
92
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
34
Homo sapiens
Biosample type
20
tissue
12
primary cell
2
cell line
Organ
253
pancreas
172
epithelium
157
liver
128
connective tissue
89
bone element
77
adipose tissue
59
brain
46
kidney
36
heart
36
vasculature
34
blood vessel
27
musculature of body
23
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
assay_slims!
Transcription
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
Hi-C
WGBS
pCHi-C
tissue
aorta
2
1
2
1
tibial artery
5
thoracic aorta
4
ascending aorta
3
coronary artery
2
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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