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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
5
Hi-C
2
WGBS
1
pCHi-C
Assay category
Transcription
21
DNA binding
5
3D chromatin structure
2
DNA methylation
Target of assay
16
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
11
May, 2019
8
October, 2019
4
July, 2019
3
March, 2020
2
February, 2021
1
November, 2017
Available data
bed narrowPeak
96
bam
71
bigWig
59
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
29
Homo sapiens
Biosample type
15
tissue
12
primary cell
2
cell line
Organ
253
pancreas
172
epithelium
157
liver
128
connective tissue
89
bone element
77
adipose tissue
59
brain
46
kidney
36
heart
36
vasculature
34
blood vessel
27
musculature of body
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
29
AMP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
assay_slims!
Transcription
organ_slims!
limb
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
Hi-C
WGBS
pCHi-C
tissue
aorta
2
1
2
1
thoracic aorta
4
ascending aorta
3
coronary artery
2
primary cell
endothelial cell of umbilical vein
7
2
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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