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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
9
Transcription
5
3D chromatin structure
Date released
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
October, 2019
Available data
bam
150
bigWig
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
15
Homo sapiens
Biosample type
11
tissue
4
primary cell
Organ
251
pancreas
195
epithelium
146
kidney
106
heart
93
bone element
87
connective tissue
76
liver
47
adipose tissue
42
brain
27
eye
26
musculature of body
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
15
AMP
Genome assembly (visualization)
5
hg19
Lab
15
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
bam
BIOSAMPLE
ASSAY
15 results
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Clear Filters
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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