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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
4
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
9
Transcription
4
3D chromatin structure
Date released
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
October, 2019
Available data
bam
114
bigWig
bed narrowPeak
68
tsv
46
bigBed narrowPeak
7
bed bed3+
7
bed broadPeak
7
bigBed broadPeak
6
tagAlign
3
fastq
2
bedpe bed3+
2
hdf5
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
14
Homo sapiens
Biosample type
11
tissue
3
primary cell
Organ
247
pancreas
192
epithelium
144
kidney
105
heart
93
bone element
83
connective tissue
76
liver
46
adipose tissue
39
brain
26
musculature of body
20
lung
15
vasculature
14
blood vessel
9
blood
9
bodily fluid
8
skeleton
7
limb
6
eye
4
artery
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
14
AMP
Genome assembly (visualization)
4
hg19
Lab
14
AMP-T2D consortium
files.file_type!
bed narrowPeak
bam
month_released!
October, 2019
BIOSAMPLE
ASSAY
14 results
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Clear Filters
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
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