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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
single cell RNA-seq
4
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
9
Transcription
4
3D chromatin structure
Date released
6
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
1
October, 2019
Available data
bam
145
bigWig
bed narrowPeak
76
bigBed narrowPeak
68
tsv
10
bed broadPeak
10
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
14
Homo sapiens
Biosample type
11
tissue
3
primary cell
Organ
251
pancreas
195
epithelium
146
kidney
106
heart
93
bone element
87
connective tissue
76
liver
47
adipose tissue
brain
27
eye
26
musculature of body
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
14
AMP
Genome assembly (visualization)
4
hg19
Lab
14
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed narrowPeak
bam
organ_slims!
brain
BIOSAMPLE
ASSAY
14 results
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Clear Filters
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
coronary artery
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
endothelial cell of hepatic sinusoid
1
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