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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
total RNA-seq
18
ChIP-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
65
Transcription
18
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
18
control
Date released
54
February, 2021
11
May, 2019
6
August, 2021
5
July, 2019
5
October, 2019
3
February, 2020
3
March, 2020
Available data
153
bam
126
bigWig
bed narrowPeak
66
tsv
62
bigBed narrowPeak
6
tagAlign
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
87
Homo sapiens
Biosample type
54
cell line
33
tissue
primary cell
Organ
585
connective tissue
476
adipose tissue
403
pancreas
305
liver
195
heart
150
bone element
87
blood vessel
87
vasculature
73
brain
67
epithelium
65
artery
31
musculature of body
30
kidney
30
limb
26
eye
23
embryo
16
nerve
11
spleen
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
57
GRCh38
57
hg19
Lab
87
AMP-T2D consortium
files.file_type!
bed narrowPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
2
tissue
aorta
1
2
4
2
1
1
thoracic aorta
2
4
tibial artery
1
5
ascending aorta
2
3
coronary artery
1
2
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