Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
48
DNA binding
24
Transcription
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
16
July, 2019
12
February, 2020
10
October, 2019
9
October, 2017
3
May, 2019
2
March, 2020
Available data
208
bam
187
bigWig
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
tagAlign bed3+
Organism
79
Homo sapiens
Biosample type
69
tissue
10
primary cell
Organ
633
pancreas
592
connective tissue
476
adipose tissue
349
liver
304
epithelium
202
heart
152
kidney
147
bone element
103
vasculature
101
blood vessel
79
brain
67
artery
34
musculature of body
30
limb
27
eye
23
embryo
16
nerve
11
spleen
10
lung
9
vein
6
blood
6
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
22
hg19
14
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
79 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
cingulate gyrus
7
layer of hippocampus
6
substantia nigra
4
1
caudate nucleus
3
1
+ See 22 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
+ See 1 more…
See all biosamples
Download