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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
24
Transcription
4
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
3
control
Date released
17
July, 2019
12
February, 2020
2
March, 2020
2
October, 2019
1
February, 2023
1
October, 2017
Available data
50
bigWig
47
bam
35
bed bed3+
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
35
Homo sapiens
Biosample type
28
tissue
7
primary cell
Organ
654
pancreas
514
connective tissue
412
adipose tissue
341
epithelium
211
liver
182
heart
158
kidney
151
bone element
76
vasculature
75
blood vessel
58
artery
35
brain
25
eye
24
musculature of body
20
lung
15
embryo
12
limb
9
blood
9
bodily fluid
8
skeleton
5
nerve
3
spleen
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
35
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
35 results
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total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
1
1
1
cerebellum (Hemisphere)
1
1
1
frontal cortex
2
1
Ammon's horn
1
1
cerebellum
2
+ See 13 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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