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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
48
DNA binding
24
Transcription
4
DNA accessibility
2
DNA methylation
Target of assay
31
control
20
histone
20
histone modification
11
narrow histone mark
9
broad histone mark
Date released
27
November, 2017
14
July, 2019
12
February, 2020
11
October, 2019
10
October, 2017
3
May, 2019
2
March, 2020
1
February, 2023
Available data
243
bam
219
bigWig
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
26
tsv
21
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
80
Homo sapiens
Biosample type
73
tissue
7
primary cell
Organ
723
pancreas
608
connective tissue
478
adipose tissue
365
epithelium
346
liver
199
heart
170
kidney
151
bone element
98
vasculature
96
blood vessel
80
brain
67
artery
30
musculature of body
28
eye
26
limb
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
8
skeleton
7
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
20
hg19
16
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
assay_title!
Hi-C
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
substantia nigra
4
1
+ See 24 more…
primary cell
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
See all biosamples
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