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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
total RNA-seq
8
ChIP-seq
1
GRO-seq
1
RRBS
Assay category
15
Transcription
8
DNA binding
1
DNA methylation
Target of assay
7
control
1
histone
1
histone modification
1
narrow histone mark
Date released
8
August, 2021
7
February, 2018
5
December, 2017
2
July, 2019
2
May, 2021
1
January, 2018
Available data
37
bam
30
bigWig
27
fastq
15
tsv
bed narrowPeak
3
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
25
Homo sapiens
Biosample type
15
in vitro differentiated cells
8
cell line
1
primary cell
1
tissue
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
17
hg19
16
GRCh38
1
hg18
Lab
25
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
25 results
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Clear Filters
total RNA-seq
ChIP-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
4
6
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
tissue
pericardium
1
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