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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
70
single cell RNA-seq
49
ATAC-seq
47
WGBS
26
ChIP-seq
7
Hi-C
6
RRBS
2
DNase-seq
Assay category
163
Transcription
53
DNA methylation
51
DNA accessibility
26
DNA binding
7
3D chromatin structure
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
37
February, 2023
33
April, 2018
33
July, 2018
26
September, 2018
19
September, 2020
13
July, 2019
13
October, 2019
12
August, 2017
7
August, 2020
6
February, 2021
5
December, 2019
3
August, 2018
3
October, 2022
2
June, 2019
2
November, 2017
2
October, 2018
1
August, 2021
1
June, 2018
1
March, 2020
1
May, 2019
Available data
242
bam
238
fastq
231
bigWig
116
tsv
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
300
Homo sapiens
Biosample type
300
primary cell
64
cell line
6
in vitro differentiated cells
3
tissue
Organ
300
epithelium
278
pancreas
22
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
152
HPAP
148
AMP
Genome assembly (visualization)
127
hg19
120
GRCh38
Lab
152
Klaus Kaestner, Upenn
148
AMP-T2D consortium
Audit category:
4
audit script error
4
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
300 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
Hi-C
RRBS
DNase-seq
primary cell
pancreatic alpha cell
52
12
29
31
6
1
pancreatic beta cell
21
12
16
16
6
1
pancreatic acinar cell
4
12
4
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
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