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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
66
single cell RNA-seq
17
ChIP-seq
10
ATAC-seq
6
WGBS
2
Hi-C
Assay category
147
Transcription
17
DNA binding
10
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
17
control
Date released
37
February, 2023
33
July, 2018
29
April, 2018
26
September, 2018
19
September, 2020
12
August, 2017
7
August, 2020
6
February, 2021
3
August, 2018
3
December, 2017
2
July, 2019
2
November, 2017
2
October, 2018
1
June, 2018
Available data
317
bam
301
bigWig
257
fastq
156
tsv
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
182
Homo sapiens
Biosample type
179
primary cell
3
in vitro differentiated cells
Organ
327
pancreas
182
epithelium
99
liver
57
connective tissue
35
adipose tissue
13
embryo
10
brain
10
spleen
6
blood
6
bodily fluid
4
vasculature
3
blood vessel
3
musculature of body
Project
113
AMP
69
HPAP
Genome assembly (visualization)
104
GRCh38
98
hg19
Lab
113
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
182 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
52
12
6
7
6
pancreatic beta cell
21
12
6
3
pancreatic acinar cell
4
9
pancreatic ductal cell
4
9
pancreatic delta cell
11
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in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
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