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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
18
ATAC-seq
6
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
38
Transcription
18
DNA accessibility
6
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
9
control
3
nucleotide modification
Date released
26
February, 2021
23
May, 2021
6
November, 2020
4
March, 2020
4
November, 2019
3
December, 2017
3
February, 2023
2
August, 2021
1
December, 2019
1
July, 2019
1
October, 2019
Available data
75
bam
70
bigWig
bed narrowPeak
40
tsv
19
fastq
15
bigBed narrowPeak
3
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
73
Homo sapiens
Biosample type
primary cell
64
cell line
6
in vitro differentiated cells
4
tissue
Organ
587
connective tissue
476
adipose tissue
454
pancreas
342
liver
195
heart
157
kidney
150
bone element
87
blood vessel
87
vasculature
73
brain
73
epithelium
65
artery
31
musculature of body
30
limb
26
eye
23
embryo
20
lung
16
nerve
11
spleen
8
skeleton
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
2
T1D
Genome assembly (visualization)
40
hg19
36
GRCh38
Lab
68
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
65
inconsistent ontology term
1
audit script error
files.file_type!
bed narrowPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
RNA microarray
RRBS
cell line
EndoC_BH1
33
18
2
6
2
1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
Hepatic endoderm
2
endothelial cell
1
hepatocyte
1
intermediate endothelial cell
1
pancreatic PP cell
1
tissue
pigmented layer of retina
2
pericardium
1
renal glomerulus
1
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