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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
7
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
18
DNA binding
16
Transcription
10
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
17
control
1
histone
1
histone modification
1
narrow histone mark
Date released
21
October, 2019
19
April, 2020
5
July, 2019
3
February, 2020
1
March, 2020
1
May, 2019
Available data
114
bam
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
8
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
50
tissue
Organ
732
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
31
AMP
19
LungMap
Genome assembly (visualization)
5
GRCh38
4
hg19
Lab
31
AMP-T2D consortium
19
Xin Sun, UCSD
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
lung
10
9
1
tibial nerve
11
5
tibial artery
5
1
gastrocnemius medialis
1
4
muscle of leg
1
1
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