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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
12
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
6
July, 2019
3
March, 2020
2
June, 2019
1
January, 2018
1
May, 2019
1
May, 2022
Available data
62
bigWig
bed narrowPeak
51
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
27
Homo sapiens
Biosample type
24
tissue
3
primary cell
Organ
253
pancreas
172
epithelium
157
liver
128
connective tissue
89
bone element
77
adipose tissue
59
brain
46
kidney
36
heart
36
vasculature
34
blood vessel
27
musculature of body
23
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_slims!
Transcription
BIOSAMPLE
ASSAY
27 results
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Clear Filters
ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
gastrocnemius medialis
4
psoas muscle
2
1
muscle of leg
1
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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