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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
12
DNA binding
Transcription
6
DNA methylation
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
2
July, 2019
2
June, 2019
1
January, 2018
1
March, 2020
1
May, 2019
1
May, 2022
Available data
62
bigWig
bed narrowPeak
51
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
tsv
1
txt
Organism
21
Homo sapiens
Biosample type
18
tissue
3
primary cell
Organ
244
pancreas
164
epithelium
153
liver
127
connective tissue
89
bone element
77
adipose tissue
56
brain
45
kidney
33
heart
31
vasculature
29
blood vessel
21
musculature of body
19
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
7
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
assay_slims!
Transcription
assay_title!
Hi-C
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
muscle of leg
1
1
psoas muscle
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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