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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
5
RRBS
4
Hi-C
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
7
Transcription
6
DNA methylation
4
3D chromatin structure
2
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
10
July, 2019
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
66
bigWig
bed narrowPeak
55
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
1
txt
Organism
31
Homo sapiens
Biosample type
26
tissue
5
primary cell
Organ
721
pancreas
607
connective tissue
477
adipose tissue
368
epithelium
347
liver
195
heart
169
kidney
151
bone element
99
vasculature
97
blood vessel
81
brain
67
artery
31
musculature of body
30
limb
28
eye
23
embryo
19
lung
16
nerve
15
blood
15
bodily fluid
10
spleen
8
skeleton
8
vein
4
gonad
4
ovary
2
pericardium
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
1
thymus
Project
31
AMP
Genome assembly (visualization)
9
hg19
5
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
March, 2020
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
1
1
1
gastrocnemius medialis
4
1
muscle of leg
1
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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