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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
49
ATAC-seq
47
WGBS
24
ChIP-seq
3
Hi-C
Assay category
155
Transcription
49
DNA accessibility
47
DNA methylation
24
DNA binding
3
3D chromatin structure
Target of assay
12
control
12
histone
12
histone modification
8
narrow histone mark
4
broad histone mark
Date released
80
May, 2022
37
February, 2023
37
July, 2018
33
April, 2018
26
September, 2018
24
August, 2017
19
September, 2020
7
August, 2020
6
February, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
258
fastq
194
bam
192
bigWig
108
tsv
80
zippedFastqFolder
bed narrowPeak
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
278
Homo sapiens
Biosample type
382
tissue
278
primary cell
71
cell line
1
in vitro differentiated cells
Organ
300
epithelium
278
pancreas
22
connective tissue
16
vasculature
14
blood vessel
14
kidney
10
brain
9
vein
8
blood
8
bodily fluid
8
liver
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
152
HPAP
126
AMP
Genome assembly (visualization)
124
GRCh38
117
hg19
Lab
152
Klaus Kaestner, Upenn
126
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
12
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
278 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
52
12
29
31
6
1
pancreatic beta cell
21
12
16
16
6
1
pancreatic acinar cell
4
12
4
1
pancreatic ductal cell
4
10
pancreatic endocrine cell
12
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