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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
2
ATAC-seq
Assay category
6
DNA binding
2
DNA accessibility
Target of assay
4
transcription factor
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
6
November, 2017
1
March, 2019
1
October, 2017
Available data
3205
bam
3013
bigWig
bed narrowPeak
1532
tsv
1348
fastq
957
bigBed narrowPeak
385
tagAlign
303
bed broadPeak
272
bigBed broadPeak
262
bed bed3+
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
6
cell line
2
tissue
Organ
6
liver
blood vessel
2
epithelium
2
pancreas
2
vasculature
2
vein
Project
8
AMP
Genome assembly (visualization)
7
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
8 results
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ChIP-seq
ATAC-seq
cell line
HepG2
6
tissue
islet of Langerhans
2
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